GWAS plink2 --bfile [bfile] --pheno [phenotype file] --pheno-name [phenotype colname] --covar [covariate file] --keep [sample list file]\ --maf 0.01 --hwe 0.000001 --mind 0.05 --geno 0.05\ --glm hide-covar --covar-variance-standardize --freq --ci 0.95\ --out [output file] --allow-no-sex --chr 1-22 Input file bfile (.bim, .bed, .fam), phenotype file, covariate file, sample list file (option) QC (quality control) maf: minor allele frequency가 기준 미만인 variant 제외 hwe: Hardy-Weinberg equilibrium P-valu...
원문 링크 : PLINK
